Tuesday, September 1, 2015

What if our Genetic Code Could Have Six Rather than 4 Nucleotides?


Why did nature decide to create our genetic code with only four letters?  Dr. Steven Benner at the Foundation for Applied Molecular Evolution in Florida has been researching this question for nearly 30 years.  Over this time Benner has spent his time theorizing and attempting to synthesize DNA and RNA with more than four nucleotides to increase its capabilities.  Recently his research team has successfully synthesized two synthetic nucleotides that they have deemed “P” and “Z”.  These nucleotides have the unique ability to fit into DNA’s helical sequence seamlessly allowing a glimpse into the possibilities of a six letter genetic alphabet. (1)

Benner’s six-nucleotide alphabet has shown tremendous upside in the realm of genetics. Normally our bodies only have the ability to synthesize 20 amino acids using the standard nucleotides ATCG.  Using a six-letter alphabet, it would be theoretically possibly to now synthesize up to 216 amino acids, which would allow the creation of unprecedented genes and functions throughout an organism.  Benner also continues to state that with continued engineering,, he believes a six nucleotide alphabet could even one day allow the RNA of a genome to function at a high enough level to eliminate the need for proteins as we know it.

There is no question that many more years of research are needed to adequately study Banner’s accomplishments and their future implications in genetics.  However, the infant stages of his novel research have already begun to shed light on the vast possibilities that an enhanced genome may possess.  Also, Banner doesn’t intend on accepting satisfaction from achieving his initial 6-nucleotide goal.   He has greater plans to work on the synthesis of a 10 or even 12 letter alphabet that would truly turn the world of genetics as we know it upside down.  Although Benner's plan sounds terrific on the surface, what are some potential hurdles or problems that this new science may encounter?     


Citations

Article originally viewed on “FlipBoard” and Quanta Magazine
https://www.quantamagazine.org/20150710-genetic-alphabet/


1. Georgiadis MM, Singh I, Kellett WF, Hoshika S, Benner SA, Richards NG. Structural basis for a six nucleotide genetic alphabet. J Am Chem Soc. 2015 Jun 3;137(21):6947-55. doi: 10.1021/jacs.5b03482. Epub 2015 May 18. PubMed PMID: 25961938.

1 comment:

  1. My concern with coming out with 6 nucleotides instead of 4 would be where do you start? Sure you have come up with another base pair that could potentially fit in the double helical structure of DNA, but how would you incorporate it into an organism, or how would you create some organism with 6 nucleotides in it? And if you found some way to incorporate it into an organism in some way, how would you control what phenotype it exhibits? And just coming up with the new nucleotides, you would also need to come up with new RNA and DNA polymerases, new tRNA, new everything. This just seems quite impractical and a lot of work to do something that could potentially be harmful. It's definitely very interesting that new nucleotides can be synthesized, but I'm not sure what we would actually be able to do with it.

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